Data dictionary for stochastic_sim_I_latent.RData. Values for the constants come from literature.

|**Variable name** | **Description** | **Type** | **Categories (if applicable)** |
|------------------|-----------------|------------------|-----------------|
|**run**                |  Simulation number | num  |   |
|**c**                  | Viral clearance /day | num   | constant: 2  |
|**K**                  | Total susceptible cells|  num |   constant: 4e8 |
|**mu**                 | Susceptible cell death rate /day| num   | constant:  0.22|
|**lambda**             | Susceptible cell birth rate /day | num  | constant: 8.88e7   |
|**alpha**              | Infected cell latency rate /day| num  | constant: 1  |
|**delta**              | Infected cell death rate /day | num  | constant: 0.77   |
|**p**                  | New viruses per infected cell per day| num  |  constant: 1.6e3  |
|**beta**               | New infected cells per susceptible per virus per day|  num | varies 3e-12 to 6e-12, calculated from R0  |
|**initI**              | Initial infected cells (I - replicating virus)| num  |  varies 1- 200  |
|**lagIinit**           | Initial infected cells (L - latent) | num  | constant: 0   |
|**repIinit**           | checks initI from simulation|   |   |
|**R0**                 | Reproduction number| num  |  varies: 1-2  |
|**max_time**           | Day of stopping rule (simulation end)|  num |   |
|**last_V**             | Final viral load at stopping time|num|   |
|**max_V**              | Maximum viral load during simulation|  num |   |
|**max_I**              | Maximum infected cell count during simulation| num  |   |
|**observed**           | Whether infection was observed using sampling| boolean  |   |
|**blip_obs_time**      | Total time infection has viral load in detectable range|  num |   |
|**random_blip_sample** | Randomly sampled viral load| num  |   |
|**consecutive_blips**  | Total positive samples during infection| num  |   |